Gene detail

Detailed information of OS493_021214-T1 in Lophelia pertusa

Genomic Location: scaffold_80:1239333...1242663
NR annotation: KAJ7384583.1, hypothetical protein OS493_021214 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F6RJC2	Cilia- and flagella-associated protein 161 OS=Bos taurus OX=9913 GN=CFAP161 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005902 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_021214-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for OS493_021214-T1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR24274 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021214-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021214-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

206.5Max TPM

49.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.88	30.39
polyp at pH7 6	18	18	21.57	31.43
coral polyp · control treatment	16	16	57.37	140.50
coral polyp · oil and dispersant treatment	16	16	66.60	98.33
coral polyp · oil treatment	16	16	48.70	70.89
coral polyp · dispersant treatment	16	16	100.41	206.48
Polyp	10	10	39.69	105.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.39
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.99
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	140.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.54
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.51
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.45
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	206.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.54
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	123.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	105.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	65.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	46.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	39.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.