Gene detail

Detailed information of OS493_021215-T1 in Lophelia pertusa

Genomic Location: scaffold_80:1243659...1245356
NR annotation: KAJ7384584.1, hypothetical protein OS493_021215 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q568D2	Cilia- and flagella-associated protein 161 OS=Danio rerio OX=7955 GN=cfap161 PE=2 SV=1
Q6P656	Cilia- and flagella-associated protein 161 OS=Homo sapiens OX=9606 GN=CFAP161 PE=1 SV=1
F6RJC2	Cilia- and flagella-associated protein 161 OS=Bos taurus OX=9913 GN=CFAP161 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005902 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_021215-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for OS493_021215-T1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR24274 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021215-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021215-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

127.5Max TPM

26.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.92	15.75
polyp at pH7 6	18	16	11.01	17.78
coral polyp · control treatment	16	16	28.07	71.52
coral polyp · oil and dispersant treatment	16	16	36.76	65.60
coral polyp · oil treatment	16	16	21.73	33.33
coral polyp · dispersant treatment	16	16	62.77	127.49
Polyp	10	10	16.19	23.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.49
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.08
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.85
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.20
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.33

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.