Detailed information of OS493_021224-T1 in Lophelia pertusa

Genomic Location: scaffold_80:1305534...1308383
NR annotation: KAJ7384592.1, transcriptional regulator [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E9PZM4Chromodomain-helicase-DNA-binding protein 2 OS=Mus musculus OX=10090 GN=Chd2 PE=1 SV=1
O14647Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens OX=9606 GN=CHD2 PE=1 SV=2
O14646Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=CHD1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003472 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18375
all species →		CDH1_2_SANT_HL1CDH1/2 SANT-Helical linker 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040793
all species →		DomainCDH1/2, SANT-Helical linker 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45623
all species →		CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006338
all species →		Biological Processchromatin remodelingInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0034728
all species →		Biological Processnucleosome organizationInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan
GO:0140658
all species →		Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_021224-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_021224-T1 global co-expression network
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