Gene detail

Detailed information of OS493_021251-T1 in Lophelia pertusa

Genomic Location: scaffold_80:1501878...1502333
NR annotation: KAJ7384619.1, nudix (nucleoside diphosphate linked moiety X)-type motif 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50583	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Homo sapiens OX=9606 GN=NUDT2 PE=1 SV=3
P50584	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Sus scrofa OX=9823 GN=NUDT2 PE=1 SV=3
P56380	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Mus musculus OX=10090 GN=Nudt2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009346 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020084 all species →	Conserved_site	NUDIX hydrolase, conserved site	Interproscan
IPR003565 all species →	Family	Bis(5'-nucleosyl)-tetraphosphatase	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR051325 all species →	Family	Nudix hydrolase domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21340 all species →	DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0008796 all species →	Molecular Function	bis(5'-nucleosyl)-tetraphosphatase activity	Interproscan
GO:0004081 all species →	Molecular Function	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	Interproscan
GO:0006167 all species →	Biological Process	AMP biosynthetic process	Interproscan
GO:0006754 all species →	Biological Process	ATP biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01518	NUDT2; bis(5'-nucleosidyl)-tetraphosphatase	EC:3.6.1.17	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021251-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.7Max TPM

10.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.49	17.44
polyp at pH7 6	18	18	6.67	12.14
coral polyp · control treatment	16	16	13.00	23.48
coral polyp · oil and dispersant treatment	16	16	16.21	31.34
coral polyp · oil treatment	16	16	11.63	19.84
coral polyp · dispersant treatment	16	16	9.19	32.72
Polyp	10	10	13.52	20.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.97
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.40
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.