Gene detail

Detailed information of OS493_021252-T1 in Lophelia pertusa

Genomic Location: scaffold_80:1510431...1510886
NR annotation: KAJ7384620.1, nudix (nucleoside diphosphate linked moiety X)-type motif 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56380	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Mus musculus OX=10090 GN=Nudt2 PE=1 SV=3
P50584	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Sus scrofa OX=9823 GN=NUDT2 PE=1 SV=3
P50583	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Homo sapiens OX=9606 GN=NUDT2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009346 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR020084 all species →	Conserved_site	NUDIX hydrolase, conserved site	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR003565 all species →	Family	Bis(5'-nucleosyl)-tetraphosphatase	Interproscan
IPR051325 all species →	Family	Nudix hydrolase domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21340 all species →	DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0008796 all species →	Molecular Function	bis(5'-nucleosyl)-tetraphosphatase activity	Interproscan
GO:0004081 all species →	Molecular Function	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	Interproscan
GO:0006167 all species →	Biological Process	AMP biosynthetic process	Interproscan
GO:0006754 all species →	Biological Process	ATP biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01518	NUDT2; bis(5'-nucleosidyl)-tetraphosphatase	EC:3.6.1.17	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021252-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

38.1Max TPM

9.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.53	16.14
polyp at pH7 6	18	18	8.41	16.08
coral polyp · control treatment	16	16	8.95	17.43
coral polyp · oil and dispersant treatment	16	16	12.25	38.06
coral polyp · oil treatment	16	16	9.16	15.07
coral polyp · dispersant treatment	16	16	5.45	9.34
Polyp	10	10	11.80	18.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.29
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.17
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.06
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.42

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.