Detailed information of OS493_021356-T1 in Lophelia pertusa

Genomic Location: scaffold_81:1382219...1383546
NR annotation: KAJ7378770.1, hypothetical protein OS493_021356 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000290 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01753
all species →		zf-MYNDMYND fingerDomainInterproscan
PF13229
all species →		Beta_helixRight handed beta helix regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002893
all species →		DomainZinc finger, MYND-typeInterproscan
IPR006626
all species →		RepeatParallel beta-helix repeatInterproscan
IPR011050
all species →		Homologous_superfamilyPectin lyase fold/virulence factorInterproscan
IPR051550
all species →		FamilySCF Complex Subunits and Alginate EpimerasesInterproscan
IPR012334
all species →		Homologous_superfamilyPectin lyase foldInterproscan
IPR039448
all species →		DomainRight handed beta helix domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22990
all species →		F-BOX ONLY PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0042981
all species →		Biological Processregulation of apoptotic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_021356-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_021356-T1 global co-expression network
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