Gene detail

Detailed information of OS493_021412-T1 in Lophelia pertusa

Genomic Location: scaffold_82:609566...620596
NR annotation: KAJ7371986.1, PDZ domain-containing protein 8 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005389 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR039275 all species →	Family	PDZ domain-containing protein 8	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21519 all species →	PDZ DOMAIN-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0044233 all species →	Cellular Component	mitochondria-associated endoplasmic reticulum membrane contact site	Interproscan
GO:0051560 all species →	Biological Process	mitochondrial calcium ion homeostasis	Interproscan
GO:1990456 all species →	Biological Process	mitochondrion-endoplasmic reticulum membrane tethering	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021412-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021412-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

24.8Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.39	8.43
polyp at pH7 6	18	18	5.84	7.89
coral polyp · control treatment	16	16	8.73	21.97
coral polyp · oil and dispersant treatment	16	16	7.62	24.78
coral polyp · oil treatment	16	16	7.28	11.16
coral polyp · dispersant treatment	16	16	4.65	7.93
Polyp	10	9	2.58	4.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.