Gene detail

Detailed information of OS493_021466-T1 in Lophelia pertusa

Genomic Location: scaffold_82:1200665...1201045
NR annotation: KAJ7372038.1, Melanocortin receptor 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IS44	Dopamine D2-like receptor OS=Drosophila melanogaster OX=7227 GN=Dop2R PE=2 SV=2
Q24563	Dopamine receptor 2 OS=Drosophila melanogaster OX=7227 GN=Dop1R2 PE=2 SV=1
O97772	Cholecystokinin receptor type A OS=Oryctolagus cuniculus OX=9986 GN=CCKAR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000571 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24248 all species →	ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0001591 all species →	Molecular Function	dopamine neurotransmitter receptor activity, coupled via Gi/Go	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0071880 all species →	Biological Process	adenylate cyclase-activating adrenergic receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021466-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021466-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

14.4Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.78	10.15
polyp at pH7 6	18	17	3.61	7.06
coral polyp · control treatment	16	16	7.19	13.01
coral polyp · oil and dispersant treatment	16	15	5.45	13.64
coral polyp · oil treatment	16	16	6.60	13.04
coral polyp · dispersant treatment	16	16	4.84	8.36
Polyp	10	10	7.07	14.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.