Gene detail

Detailed information of OS493_021472-T1 in Lophelia pertusa

Genomic Location: scaffold_82:1297195...1298595
NR annotation: KAJ7372044.1, ndufa2, NADH:ubiquinone oxidoreductase 10.5kD subunit [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02370	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus OX=9913 GN=NDUFA2 PE=1 SV=2
O43678	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens OX=9606 GN=NDUFA2 PE=1 SV=3
Q4R5E2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis OX=9541 GN=NDUFA2 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009839 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05047 all species →	L51_S25_CI-B8	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016464 all species →	Family	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR007741 all species →	Domain	Ribosomal protein/NADH dehydrogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12878 all species →	NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021472-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021472-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

415.0Max TPM

70.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	71.96	109.37
polyp at pH7 6	18	18	86.38	107.91
coral polyp · control treatment	16	16	69.59	308.58
coral polyp · oil and dispersant treatment	16	16	63.38	414.98
coral polyp · oil treatment	16	16	56.87	79.47
coral polyp · dispersant treatment	16	16	38.49	94.91
Polyp	10	10	125.19	169.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	109.37
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.93
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	107.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	106.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.86
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	308.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.14
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.68
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	414.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	169.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	154.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	147.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	128.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	124.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	117.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	114.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	106.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	101.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	88.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.