Gene detail

Detailed information of OS493_021479-T1 in Lophelia pertusa

Genomic Location: scaffold_82:1369864...1370450
NR annotation: KAJ7372051.1, hypothetical protein OS493_021479 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000253 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051746 all species →	Family	Kelch domain-containing protein 8	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46260 all species →	RING-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021479-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021479-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

72.6Max TPM

12.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.46	10.78
polyp at pH7 6	18	18	6.58	19.22
coral polyp · control treatment	16	16	11.10	24.36
coral polyp · oil and dispersant treatment	16	16	18.77	41.46
coral polyp · oil treatment	16	16	13.92	35.15
coral polyp · dispersant treatment	16	16	28.61	72.62
Polyp	10	10	6.49	11.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.96
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.70
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.83
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.23
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.83

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.