Gene detail

Detailed information of OS493_021491-T1 in Lophelia pertusa

Genomic Location: scaffold_82:1543973...1552102
NR annotation: KAJ7372062.1, negative regulation of T cell migration [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58588	Uncharacterized protein MJ1187 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1187 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001646 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03747 all species →	ADP_ribosyl_GH	ADP-ribosylglycohydrolase	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005502 all species →	Family	ADP-ribosylation/Crystallin J1	Interproscan
IPR036705 all species →	Homologous_superfamily	ADP-ribosylation/Crystallin J1 superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050792 all species →	Family	ADP-ribosylglycohydrolase	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16222 all species →	ADP-RIBOSYLGLYCOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021491-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_021491-T1 global co-expression network