Gene detail

Detailed information of OS493_021510-T1 in Lophelia pertusa

Genomic Location: scaffold_83:282033...303387
NR annotation: KAJ7358735.1, hypothetical protein OS493_021510 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_021510-T1

ATGGCGGGTCAGGTTCGCGTGCTCCAGCTCGAAGCGGAACAGGATTTGGAAACCAAACTATTCAGACTGGAAAAAGGATGGACGCTCCGCTTCACACTGGGCCCTTCATTACAACCTTACAATGTGCACTTATTTTGCAACCATCCAGTATCTGGCCAGCAGCCATTTGATAGAAAAAAGTACAATGAGTTGTCTTGGACCTGCCTGCCTGGACAGCAGTGTGACGATGCTGACAGATTTGCTGACATTACAGCGCACACAGCAGGATCATTTCATTTCTATGTTACTTACAAAGATGGTGGACAGCTAGAAACAGAGGAGAAAAGAACAACATCAGGTTATTTTACAGTGGATCCAGTTCTAAGAGTAAACAGTACAAAAACTATACCATTGGATTGTGTGAGCTTACAGACTGTGCTGTCCAAGAGTCTTGGACCTCTCACTGAGTGGAGTGATCGACTTAGGGTGACAAAAGAAACTGGCTACAACATGATTCACTTTACACCGATACAGCAACTGGGGAAATCAAACTCTTCATATTCTCTGTCAGATCAGCTAAGCATCAATTCTGCATTTCATTCACCTGGGAGAAAGAATGCTACATTTGATGGAGTAAAGGAAGTCCTTGATAATATGCGCAAGGACTGGAAAATATTGTCAGTAGTGGACATAGTGCTTAACCACACGGGTAACAACTCTCCTTGGTTATGGGCTCATCCAGAGTGCGCATACAACTTAGAAAACTCGCCTCATCTCAAACCTGCATTTTTGTTGGATCGCGCTCTCTGGCACTTCTCTTGTCAAGTAGCTGAAGGGTTATGGATTGAGGATGGTCTGCCAGCAGAAGTGAACAATGAAGACCATATTCACAAACTTGGCGAAATCTTACGACATAAAGTCTTGCCAAAACTGCATCTGTGGGAGTTCTTTTGTGTGGATGTCAAAAAGACAGTAGATCAGTTCCGAACTGCCATGCTGAAGGCAAAAAGGCCAGTCAGTGGTGCATCCAAACATGATGAGCCACCGCTGAAGGTGACAACTGACATGTCTTATCAACGCTTTTCTGCAACAATAGACATGGAAAAGGCCCTAGAGAAGTTCAACACAGAACGCTCTGATGCTTTGGATGAAAAGGAGCGACTGCAGTTATGCTGTGATGCTTTTAAGGCACATCTTATTAGCCGCAATGAAGTCATCAAGAACAACGAAGTTGCTGATCATATCGAGTCTGCTATAAAAAGTTCACAAAATGGTGTTAGGTATGAGCGTCTGGATCCTAATGGACCAAAACATCCAAGAGTTACTAAAAAATCTCCTTTGGTAACAAATTACTTCATAACACCTGGTGACTGTGATACAGTCGAGGAAGAGGAGAAGCTGATGTTTTCTGACAAGGCGAGATTTTGTATGGCGCATCAAGGGTGGATATGGGGAGGAGACCCTCTGAAGGACTTTGCTGCCCCTGGATCATTAGTATATCTGCGACGTGAACTCATTGCGTGGGGTGACAGTGTAAAACTTCGATATGGCGAAAAACCTGAAGATGCTCCTTTTCTTTGGAATCACATGCTACAGTATACTAAGACTTGTGCAAGGTTGTTTGATGGCATTCGCCTAGATAATTGCCACAGCACACCACTTCATGTGGCAGAGTACTATGTGGATGCAGCGCGGCAAGTAAAACCAGAGTTGTATGTTACAGCAGAATTGTTCACTGGTTCTGAAGCTACTGACAATATTTTTGTCAATCAATTGGGAATCACATCACTTATAAGAGAAGCTCTGAATGCTCATGATCCTCACGAGGAGGGACGATTGATTTATCACTATGGAGGTGAACCTGTCGGCGCCTTCATGCACCCATCAGACGTGAAGCCTCTTGTGCCCAGCATTGCACATGCACTCTTTATGGATGTTACACATGACAACCCCAGTCCATTTCAGGTTCGATCTGTATATGATGCTATTGCCAGTGCTGGTTTAGTCTCAATGGCATGCTGTGCTACTGGCAGCTCCAGAGGATATGATGAACTGGTACCTCATCATATCCACGTGGTCAAAGAAGATCGCCGTTACCTGTCATGGCCAAATAAGAAGTCTAAGCTTAAAGGCACTGCATTTGTCAAGGAAAGTGATGGTATTGTGTCAGCCAAAAAGCCATCAATGAGTTACACAGATGGCTTGGGGAGAAGGATATACGCAGATGTCGCCGAACCACCGGTGTATGTGGATCAGATTCATCACGATGTTCACGCCATCACTAGACACTGTCCAGACAAGAGAAAAACAGTTGTTTTAGTAGCACATTCTGCCTTTCACAACCCCTCTGAGGACCTCCAACCCACCATGCACAAGCAGAAAATTAACATGAATGGTATACCTCCACTTACTATACCAGGTGAGATCAATGAAATCATTTTTGAAGCCATGTTAGTGAAGAAGCCAGACTCAAAAGATTTTAGTAAAGATGCTGAGTTCATCAATGGTCTTCAGTCACATGAGGTATTGCTTCAGAAGCATATCCCACTTCACAAGTCCAAGACATGTCGTGCAGAGCAAAAAGGGAATAACACATTTGAAGTGTCATTAAGGCAGCTTGGTGTGGACTTGTATGAGAAAAGATCTGGGAGCCAGGAGAGTTATAAGACCATTGACGAATTAGAGGCAATTATCGCCAATCTGTCGCTATCTGATCTCAACCGTGTGCTGTACAGAGCTAATCCTGAAGAACAAGATGATGGGAATGGCGGGGGAGTGTATGTTCTGCCTGACTCAGGAGCGCTAGTGTACTGTGGCTTACAAGGTGTGATATCTGTAATGGCCGATGTTCGTCAGTTCAATGATCTAGCGCATCCTCTGTGTAGAAATCTGCGAGATGGAAATTGGTTGATGGACTATGTTGTAGCAAGACTTCTTCCTTTTGTTGGTACAAGACAGCTGGGTACATGGCTTGACAAGACGTTCAATCTGATCAAGGAATGTCCGCGATATCTGGTGCCGTGCTATTTTGACGCCATTATCACTCCCCTTTATCTCAAGTTGTTGGATCGTGCTTGGAGTCAGATGTCGAGGTTTGTTGTAATGTTTTGTAAGGAATGGTTCATCGTTTCTCAAGGCTCTCTCTCTTGGCTCGCTCCAGTTCGTTGGTTTGTCACGGTTCAGCCTCTCTTCCAGCTCTGTCGCCCAAACTGCACCATGGGCCATCATCTGGAGCAGATATTAGCCAACTCTGACGTCACTTGCAGCAGGCTTGCCTCATTTCTCTACTGGCTTCATGCGCTGTTGGGGAAGAGACACCTTCATCTCTCTCAGAGGATTATTACTTGTAACTGGCCAGATACCAGGAGGCCAGGTGTGTTAGTTGTCTTGTCACTACGCCTTTCATAA

Transcript

OS493_021510-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35573	Glycogen debranching enzyme OS=Homo sapiens OX=9606 GN=AGL PE=1 SV=3
A8BQB4	Glycogen debranching enzyme OS=Equus caballus OX=9796 GN=AGL PE=2 SV=1
Q2PQH8	Glycogen debranching enzyme OS=Canis lupus familiaris OX=9615 GN=AGL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14702 all species →	hGDE_central	Central domain of human glycogen debranching enzyme	Domain	Interproscan
PF14699 all species →	hGDE_N	N-terminal domain from the human glycogen debranching enzyme	Family	Interproscan
PF14701 all species →	hDGE_amylase	Glycogen debranching enzyme, glucanotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032788 all species →	Domain	Glycogen debranching enzyme, central domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR032792 all species →	Domain	Glycogen debranching enzyme, glucanotransferase domain	Interproscan
IPR010401 all species →	Family	Glycogen debranching enzyme	Interproscan
IPR029436 all species →	Domain	Eukaryotic glycogen debranching enzyme, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10569 all species →	GLYCOGEN DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004134 all species →	Molecular Function	4-alpha-glucanotransferase activity	Interproscan
GO:0004135 all species →	Molecular Function	amylo-alpha-1,6-glucosidase activity	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021510-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_021510-T1 global co-expression network