Gene detail

Detailed information of OS493_021522-T1 in Lophelia pertusa

Genomic Location: scaffold_83:419131...420603
NR annotation: KAJ7358746.1, Zinc finger FYVE domain-containing protein 9 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95405	Zinc finger FYVE domain-containing protein 9 OS=Homo sapiens OX=9606 GN=ZFYVE9 PE=1 SV=2
Q7Z3T8	Zinc finger FYVE domain-containing protein 16 OS=Homo sapiens OX=9606 GN=ZFYVE16 PE=1 SV=3
Q80U44	Zinc finger FYVE domain-containing protein 16 OS=Mus musculus OX=10090 GN=Zfyve16 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004472 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR006058 all species →	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46319 all species →	ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021522-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021522-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

59.3Max TPM

14.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.76	20.65
polyp at pH7 6	18	18	9.81	16.34
coral polyp · control treatment	16	16	17.83	55.33
coral polyp · oil and dispersant treatment	16	16	23.67	59.31
coral polyp · oil treatment	16	16	12.77	17.76
coral polyp · dispersant treatment	16	16	21.73	35.25
Polyp	10	10	5.68	13.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.66
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.77
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.50
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.72
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.71
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.09
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.