Gene detail

Detailed information of OS493_021524-T1 in Lophelia pertusa

Genomic Location: scaffold_83:425866...430038
NR annotation: KAJ7358748.1, EF-hand calcium binding domain 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005339 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_021524-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052266 all species →	Family	Mitochondrial Rho GTPase/EF-hand domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46819 all species →	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0060170 all species →	Cellular Component	ciliary membrane	Interproscan
GO:0098797 all species →	Cellular Component	plasma membrane protein complex	Interproscan
GO:1903569 all species →	Biological Process	positive regulation of protein localization to ciliary membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021524-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021524-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

24.0Max TPM

11.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.15	16.59
polyp at pH7 6	18	16	9.75	16.37
coral polyp · control treatment	16	16	14.65	23.50
coral polyp · oil and dispersant treatment	16	16	11.17	17.27
coral polyp · oil treatment	16	16	14.20	23.95
coral polyp · dispersant treatment	16	16	7.79	20.52
Polyp	10	9	10.25	14.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.92
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.10
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.90
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.90
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.