Gene detail

Detailed information of OS493_021537-T1 in Lophelia pertusa

Genomic Location: scaffold_83:579404...586123
NR annotation: KAJ7358760.1, hypothetical protein OS493_021537 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34729	Ras-like protein 1 OS=Physarum polycephalum OX=5791 GN=RAS1 PE=2 SV=1
P32883	GTPase KRas OS=Mus musculus OX=10090 GN=Kras PE=1 SV=1
P08644	GTPase KRas OS=Rattus norvegicus OX=10116 GN=Kras PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006608 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020849 all species →	Family	Small GTPase, Ras-type	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR000126 all species →	Active_site	Serine proteases, V8 family, serine active site	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24070 all species →	RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019003 all species →	Molecular Function	GDP binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021537-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021537-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

96.2Max TPM

50.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	51.45	88.17
polyp at pH7 6	18	18	48.82	96.20
coral polyp · control treatment	16	16	45.71	60.97
coral polyp · oil and dispersant treatment	16	16	51.66	70.66
coral polyp · oil treatment	16	16	45.60	63.35
coral polyp · dispersant treatment	16	16	61.96	87.03
Polyp	10	10	46.20	67.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.68
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.11
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.70
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.84
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.01
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	67.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	64.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	60.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	48.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	46.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	45.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	35.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	31.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.