Gene detail

Detailed information of OS493_021543-T1 in Lophelia pertusa

Genomic Location: scaffold_83:646593...648807
NR annotation: KAJ7358766.1, hypothetical protein OS493_021543 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001017 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17517 all species →	IgGFc_binding	IgGFc binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035234 all species →	Domain	IgGFc-binding protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46534 all species →	IGGFC_BINDING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_021543-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021543-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021543-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

39.3Max TPM

10.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.69	8.22
polyp at pH7 6	18	15	3.98	9.05
coral polyp · control treatment	16	16	12.30	26.92
coral polyp · oil and dispersant treatment	16	16	21.64	37.16
coral polyp · oil treatment	16	16	9.74	22.98
coral polyp · dispersant treatment	16	16	19.88	39.34
Polyp	10	7	0.81	2.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.80
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.34
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.77
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.