Gene detail

Detailed information of OS493_021563-T1 in Lophelia pertusa

Genomic Location: scaffold_83:787259...796024
NR annotation: KAJ7358784.1, protein kinase A catalytic subunit [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12370	cAMP-dependent protein kinase catalytic subunit 1 OS=Drosophila melanogaster OX=7227 GN=Pka-C1 PE=1 SV=3
A8XW88	cAMP-dependent protein kinase catalytic subunit OS=Caenorhabditis briggsae OX=6238 GN=kin-1 PE=1 SV=2
P05132	cAMP-dependent protein kinase catalytic subunit alpha OS=Mus musculus OX=10090 GN=Prkaca PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001559 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR044109 all species →	Family	cAMP-dependent protein kinase catalytic subunit	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24353 all species →	CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010737 all species →	Biological Process	protein kinase A signaling	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04345	PKA; protein kinase A	EC:2.7.11.11	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021563-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

516.3Max TPM

89.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	73.74	92.11
polyp at pH7 6	18	18	77.31	101.80
coral polyp · control treatment	16	16	117.71	516.28
coral polyp · oil and dispersant treatment	16	16	115.51	460.57
coral polyp · oil treatment	16	16	82.83	114.24
coral polyp · dispersant treatment	16	16	68.19	107.72
Polyp	10	10	94.07	158.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.21
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.49
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	516.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.24
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.15
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	460.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	137.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	112.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.45
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	158.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	116.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	108.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	108.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	107.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	90.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	70.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	68.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	66.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	46.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.