Gene detail

Detailed information of OS493_021566-T1 in Lophelia pertusa

Genomic Location: scaffold_83:824129...829768
NR annotation: KAJ7358787.1, hypothetical protein OS493_021566 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PFD6	Kinesin-like protein KIF18B OS=Mus musculus OX=10090 GN=Kif18b PE=2 SV=2
Q4KLL9	Kinesin-like protein KIF18B OS=Rattus norvegicus OX=10116 GN=Kif18b PE=2 SV=1
Q86Y91	Kinesin-like protein KIF18B OS=Homo sapiens OX=9606 GN=KIF18B PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005782 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14739 all species →	DUF4472	Domain of unknown function (DUF4472)	Family	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039873 all species →	Family	Coiled-coil domain-containing protein 78	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029329 all species →	Domain	Domain of unknown function DUF4472	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22106 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 78	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021566-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021566-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

19.4Max TPM

11.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.71	19.38
polyp at pH7 6	18	18	14.33	19.10
coral polyp · control treatment	16	16	12.18	18.50
coral polyp · oil and dispersant treatment	16	15	8.34	16.39
coral polyp · oil treatment	16	16	12.83	18.87
coral polyp · dispersant treatment	16	16	8.49	18.22
Polyp	10	10	9.40	15.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.98
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.97
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.39
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.96
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.26
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.