Gene detail

Detailed information of OS493_021572-T1 in Lophelia pertusa

Genomic Location: scaffold_83:866853...872266
NR annotation: KAJ7358793.1, hypothetical protein OS493_021572 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QYT7	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q OS=Mus musculus OX=10090 GN=Pigq PE=1 SV=3
Q9BRB3	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q OS=Homo sapiens OX=9606 GN=PIGQ PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007550 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05024 all species →	Gpi1	N-acetylglucosaminyl transferase component (Gpi1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007720 all species →	Family	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q/GPI1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21329 all species →	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03860	PIGQ, GPI1; phosphatidylinositol N-acetylglucosaminyltransferase subunit Q	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021572-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

18.9Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.37	4.66
polyp at pH7 6	18	17	2.38	3.94
coral polyp · control treatment	16	16	4.33	18.95
coral polyp · oil and dispersant treatment	16	16	4.31	12.14
coral polyp · oil treatment	16	16	3.18	4.99
coral polyp · dispersant treatment	16	16	2.08	3.95
Polyp	10	9	2.46	5.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.12
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.