Detailed information of OS493_021574-T1 in Lophelia pertusa

Genomic Location: scaffold_83:896094...904018
NR annotation: KAJ7358795.1, U2 small nuclear ribonucleoprotein A' [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P09661U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2
Q4R8Y8U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1
P57784U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005199 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14580
all species →		LRR_9Leucine-rich repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR003603
all species →		DomainU2A'/phosphoprotein 32 family A, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10552
all species →		U2 SMALL NUCLEAR RIBONUCLEOPROTEIN AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005686
all species →		Cellular ComponentU2 snRNPInterproscan
GO:0030620
all species →		Molecular FunctionU2 snRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11092SNRPA1; U2 small nuclear ribonucleoprotein A'-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_021574-T1 global co-expression network
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