Gene detail

Detailed information of OS493_021602-T1 in Lophelia pertusa

Genomic Location: scaffold_83:1420112...1426969
NR annotation: KAJ7358815.1, Intraflagellar transport protein 74 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BKE9	Intraflagellar transport protein 74 homolog OS=Mus musculus OX=10090 GN=Ift74 PE=1 SV=2
Q96LB3	Intraflagellar transport protein 74 homolog OS=Homo sapiens OX=9606 GN=IFT74 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003434 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_021602-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029602 all species →	Family	Intraflagellar transport protein 74	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31432 all species →	INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0035735 all species →	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0048487 all species →	Molecular Function	beta-tubulin binding	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021602-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021602-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

33.2Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	8.81	15.44
polyp at pH7 6	18	13	8.29	15.34
coral polyp · control treatment	16	15	10.88	33.15
coral polyp · oil and dispersant treatment	16	15	8.21	24.96
coral polyp · oil treatment	16	16	9.17	20.18
coral polyp · dispersant treatment	16	15	6.07	19.65
Polyp	10	9	8.73	15.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.26
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.79
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.42
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.30
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.