Gene detail

Detailed information of OS493_021630-T1 in Lophelia pertusa

Genomic Location: scaffold_84:299270...308624
NR annotation: KAJ7330702.1, Elongation factor 1-gamma [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26642	Elongation factor 1-gamma-A OS=Xenopus laevis OX=8355 GN=eef1g-a PE=1 SV=1
Q90YC0	Elongation factor 1-gamma OS=Carassius auratus OX=7957 GN=eef1g PE=2 SV=1
Q68FR6	Elongation factor 1-gamma OS=Rattus norvegicus OX=10116 GN=Eef1g PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006559 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02798 all species →	GST_N	Glutathione S-transferase, N-terminal domain	Domain	Interproscan
PF00647 all species →	EF1G	Elongation factor 1 gamma, conserved domain	Domain	Interproscan
PF00043 all species →	GST_C	Glutathione S-transferase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004045 all species →	Domain	Glutathione S-transferase, N-terminal	Interproscan
IPR001662 all species →	Domain	Elongation factor 1B gamma, C-terminal	Interproscan
IPR036433 all species →	Homologous_superfamily	Elongation factor EF1B gamma, C-terminal domain superfamily	Interproscan
IPR004046 all species →	Domain	Glutathione S-transferase, C-terminal	Interproscan
IPR040079 all species →	Family	Glutathione transferase family	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR050802 all species →	Family	Elongation Factors and Glutathione S-transferases	Interproscan
IPR010987 all species →	Domain	Glutathione S-transferase, C-terminal-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43986 all species →	ELONGATION FACTOR 1-GAMMA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03233	EEF1G; elongation factor 1-gamma	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_021630-T1 global co-expression network