Gene detail

Detailed information of OS493_021637-T1 in Lophelia pertusa

Genomic Location: scaffold_84:343466...346861
NR annotation: KAJ7330709.1, Anaphase-promoting complex subunit 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H1A4	Anaphase-promoting complex subunit 1 OS=Homo sapiens OX=9606 GN=ANAPC1 PE=1 SV=1
P53995	Anaphase-promoting complex subunit 1 OS=Mus musculus OX=10090 GN=Anapc1 PE=1 SV=2
Q54NC6	Anaphase-promoting complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=anapc1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002209 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_021637-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR024990 all species →	Family	Anaphase-promoting complex subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12827 all species →	MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0007091 all species →	Biological Process	metaphase/anaphase transition of mitotic cell cycle	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0070979 all species →	Biological Process	protein K11-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021637-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021637-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

29.6Max TPM

6.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.98	13.93
polyp at pH7 6	18	16	5.57	9.38
coral polyp · control treatment	16	16	6.53	14.68
coral polyp · oil and dispersant treatment	16	16	5.17	10.40
coral polyp · oil treatment	16	16	6.94	14.17
coral polyp · dispersant treatment	16	14	5.16	15.86
Polyp	10	8	9.28	29.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.93
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.