Gene detail

Detailed information of OS493_021648-T1 in Lophelia pertusa

Genomic Location: scaffold_84:444830...450299
NR annotation: KAJ7330720.1, hypothetical protein OS493_021648 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_021648-T1

ATGGCGAAGTTGTTATGGTTTCATCTGCTGATTGTTAGTTCATCACTGCAGCTTAGCTCATCGTTAAACTGGTGGAGTCCTTATCAATGGCGAGAATACTGGGAAGACTGGTGGGAAAAGCGACATATTGAACGAAGCGAAGGAATTCCACAGCGACAACAAGGCAAAGCAGATATTCTACCGAATGATGAGGGACCAAATGTTTGCACTCATCGGATTCCCATAGGAGTATTCCGAAAATGCAGAAAAATACCTGGAAAACTGAGGCTGCAATGCAGGACTGAGCAACATTATTTGACAGAGTATCGGTGCTGTCCCGGATACACTCAAGTGGATGGAAGTCCCGGATGTCCAAAAGAGCTTTACACTTCAGATAAGAACATAATGCACGTAGCAGAGTCTCTTGGCTTGGGTGAATTTGTCAGGCTCATGAAGGCTTCTGGTCTGTCATCTGAGCTGGCTTCTGATGTGCGTTACACAGTGTTTGTACCCTCGGACCAAGCGTTCAACGCCTTGCCACCAGAAACGTTAGAAGAGGAGACACTTCGCGAAACGCTTCTGTTGCACTTGGTGTCTGGAAAGATTGTAACCGAATCAATGGAAGACAACAGAATGATAACCACACTTGACGGCTCACAGGAACTGCGGATCAATGTAGCAGATGAAGGAGAGACAATTGTGATTCAAGGAGGAGAAATTGTTGTTTCAAACCAAGGAGCAAGCAATGGAATTATTCACGTTATCGACAGAGTCCTGACACCAGCCGCCGGTGACATTGGAGACATTCTAAAAAGCGATCCAAACTTCAGCATCTTCTCACAGATGATCGACAATTCTGCAATGAACTTCGCCAACATGACTTTGTTTGCACCGACCGATCAGGCTTTTGAAGTGATGGACCGCGAGAGACTGGAAAACCTTCTTTCCAATGAGCAATGTGTTGGGAGATTTGTTAAGTACCACATGCTACCCAAGCCAATCTACTCAGCTGCGCTGGACAACGGTCGGTTCACTACTGTCGAGGGACACTTTGTTGACATTAGCGTGGAGGGAGGAGAGGTCACAGTGAATGACGCTAGCGTGACGGATGCTGACATCAGTGCCAATAATGGCATCATTCATACGATTAACAAAGTTCTTATGCCTGTTTCAGCGATGAATCTCTTGGAAGTGGCCAAAGCGCTGAACCTCACAACACTCGTGCAATACCTTGACTCCACCGGTATTTCCACCATTCTGAAGGACGAACAGGGACCGTTCACGCTGTTTGCTCCAACGAACAAAGCTTTCGAGGCTTTACCCGAGGCTACCAAGCAATCGTTGCGGGACGATCCCGCCAAACTCAAGGAACTGCTCGCTTATCACATGATTCCAGAGCGGAAGTGGACGTACGAATTTGGAAAGGATATACTGGTGAATTCTGTCAACGAGCCTAAAAAACTCCGTTTGAATTCATTCAGATACGGAAAGGTGCACTCCGTTAACGGCGCATGCATAACCAAAGCCAACATTGAAGCCTGTAATGGAGTCATTCATGTCATTCATAAAGTCCTGCTGCCGCCAAGCAAGACAGTTTATGACCTCATCAACACTGATCCTCGCTTCATAACGCTCGTGGAGGCCATAAACATTACCGCGCTCGCGCCAGTCCTCCAGAACCCCTCTGCCTCGATAACTCTGTTCGCGCCAACGGACTGGGCTTTCGCCAAACTAGAACTCAGCTCTCCTGGGTCTATGGAGAGTCTTCTCGCCTTCCCTGAAGAGCTGACAGAACTTCTTCAACAACATATGGTGAATGGAACTCTCTACACTTGTGGCATTCATTGCAAGTTTAGCTACTGGTCGCTGTTTAGCAATCATTTCTCCGTGTACTCCATGGCTCGTGGAGTCCTGAGAATGCGCTATGGCTGGAGCGGTCGTGTGTACGTCAATAGTATGCGCGTCGTGGACCTCGATCTACCGGCTACAAATGGAGTTGTTCACGTGATCGATGACGTGTTGGAGCTATATCCACAGGGGCACCGCAAACTGAAGCGTCAAGCTCATAGTCAAGGGGCGAGTCGCGGTAAAAAACACCGCTCACATTAA

Transcript

OS493_021648-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15063	Periostin OS=Homo sapiens OX=9606 GN=POSTN PE=1 SV=2
Q62009	Periostin OS=Mus musculus OX=10090 GN=Postn PE=1 SV=2
P55906	Transforming growth factor-beta-induced protein ig-h3 OS=Bos taurus OX=9913 GN=TGFBI PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002465 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02469 all species →	Fasciclin	Fasciclin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000782 all species →	Domain	FAS1 domain	Interproscan
IPR036378 all species →	Homologous_superfamily	FAS1 domain superfamily	Interproscan
IPR050904 all species →	Family	Cell adhesion and biosynthesis-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10900 all species →	PERIOSTIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19519	TGFBI, BIGH3; transforming growth factor-beta-induced protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_021648-T1 global co-expression network