Gene detail

Detailed information of OS493_021681-T1 in Lophelia pertusa

Genomic Location: scaffold_84:704079...705967
NR annotation: KAJ7330752.1, protein folding in endoplasmic reticulum [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DD71	ERO1-like protein alpha OS=Xenopus laevis OX=8355 GN=ero1a PE=2 SV=1
B1H1F9	ERO1-like protein alpha OS=Xenopus tropicalis OX=8364 GN=ero1a PE=2 SV=1
Q8R2E9	ERO1-like protein beta OS=Mus musculus OX=10090 GN=Ero1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003960 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04137 all species →	ERO1	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007266 all species →	Family	Endoplasmic reticulum oxidoreductin 1	Interproscan
IPR037192 all species →	Homologous_superfamily	ERO1-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12613 all species →	ERO1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0015035 all species →	Molecular Function	protein-disulfide reductase activity	Interproscan
GO:0016972 all species →	Molecular Function	thiol oxidase activity	Interproscan
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021681-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021681-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

94TPM > 0

7Conditions

13.8Max TPM

3.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	2.93	6.92
polyp at pH7 6	18	14	3.95	13.10
coral polyp · control treatment	16	16	5.07	13.78
coral polyp · oil and dispersant treatment	16	13	2.53	8.18
coral polyp · oil treatment	16	15	4.52	12.34
coral polyp · dispersant treatment	16	14	3.30	12.75
Polyp	10	8	4.07	7.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.