Gene detail

Detailed information of OS493_021691-T1 in Lophelia pertusa

Genomic Location: scaffold_84:801975...813048
NR annotation: KAJ7330761.1, protein folding in endoplasmic reticulum [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R2E9	ERO1-like protein beta OS=Mus musculus OX=10090 GN=Ero1b PE=1 SV=1
Q86YB8	ERO1-like protein beta OS=Homo sapiens OX=9606 GN=ERO1B PE=1 SV=2
Q9V3A6	Ero1-like protein OS=Drosophila melanogaster OX=7227 GN=Ero1L PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003960 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04137 all species →	ERO1	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007266 all species →	Family	Endoplasmic reticulum oxidoreductin 1	Interproscan
IPR037192 all species →	Homologous_superfamily	ERO1-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12613 all species →	ERO1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0015035 all species →	Molecular Function	protein-disulfide reductase activity	Interproscan
GO:0016972 all species →	Molecular Function	thiol oxidase activity	Interproscan
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021691-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021691-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

19.2Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.87	12.46
polyp at pH7 6	18	16	9.42	13.90
coral polyp · control treatment	16	16	11.83	18.56
coral polyp · oil and dispersant treatment	16	16	8.94	15.89
coral polyp · oil treatment	16	16	11.03	18.02
coral polyp · dispersant treatment	16	16	8.35	19.19
Polyp	10	9	8.10	15.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.02
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.52
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.10
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.24
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.10
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.