Gene detail

Detailed information of OS493_021707-T1 in Lophelia pertusa

Genomic Location: scaffold_84:1016021...1022951
NR annotation: KAJ7330777.1, transcription factor TFIIIB subunit brf1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92994	Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV=1
Q8CFK2	Transcription factor IIIB 90 kDa subunit OS=Mus musculus OX=10090 GN=Brf1 PE=1 SV=1
Q9P6R0	Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=brf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003281 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00382 all species →	TFIIB	Transcription factor TFIIB repeat	Domain	Interproscan
PF07741 all species →	BRF1	Brf1-like TBP-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR013150 all species →	Domain	Transcription factor TFIIB, cyclin-like domain	Interproscan
IPR011665 all species →	Domain	Brf1, TBP-binding domain	Interproscan
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR000812 all species →	Family	Transcription factor TFIIB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11618 all species →	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan
GO:0000126 all species →	Cellular Component	transcription factor TFIIIB complex	Interproscan
GO:0000995 all species →	Molecular Function	RNA polymerase III general transcription initiation factor activity	Interproscan
GO:0001006 all species →	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006383 all species →	Biological Process	transcription by RNA polymerase III	Interproscan
GO:0070897 all species →	Biological Process	transcription preinitiation complex assembly	Interproscan
GO:0097550 all species →	Cellular Component	transcription preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15196	BRF1, GTF3B; transcription factor IIIB 90 kDa subunit	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_021707-T1 global co-expression network