Detailed information of OS493_021708-T1 in Lophelia pertusa

Genomic Location: scaffold_84:1023407...1025492
NR annotation: KAJ7330778.1, transcription factor TFIIIB subunit brf1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8CFK2Transcription factor IIIB 90 kDa subunit OS=Mus musculus OX=10090 GN=Brf1 PE=1 SV=1
Q92994Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV=1
P29056Transcription factor IIIB 70 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRF1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003281 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08271
all species →		TF_Zn_RibbonTFIIB zinc-bindingDomainInterproscan
PF00382
all species →		TFIIBTranscription factor TFIIB repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013137
all species →		DomainZinc finger, TFIIB-typeInterproscan
IPR000812
all species →		FamilyTranscription factor TFIIBInterproscan
IPR036915
all species →		Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR013150
all species →		DomainTranscription factor TFIIB, cyclin-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11618
all species →		TRANSCRIPTION INITIATION FACTOR IIB-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000126
all species →		Cellular Componenttranscription factor TFIIIB complexInterproscan
GO:0000995
all species →		Molecular FunctionRNA polymerase III general transcription initiation factor activityInterproscan
GO:0001006
all species →		Molecular FunctionRNA polymerase III type 3 promoter sequence-specific DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006352
all species →		Biological ProcessDNA-templated transcription initiationInterproscan
GO:0006383
all species →		Biological Processtranscription by RNA polymerase IIIInterproscan
GO:0070897
all species →		Biological Processtranscription preinitiation complex assemblyInterproscan
GO:0097550
all species →		Cellular Componenttranscription preinitiation complexInterproscan
GO:0017025
all species →		Molecular FunctionTBP-class protein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_021708-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_021708-T1 global co-expression network
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