Gene detail

Detailed information of OS493_021775-T1 in Lophelia pertusa

Genomic Location: scaffold_85:1218239...1254679
NR annotation: KAJ7390879.1, E1 ubiquitin-activating protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_021775-T1

ATGCAAGGAGTAATCGGAGGGATTACAGCTCAGGAAGTGATGAAGGCATGCAGTGGAAAGTTCCATCCCATCTATCAACTGCTGTACTTTGACAGTCTGGAATGCTTGCCAGAAGAAGGAGAAATTTCAGAAGCCTCGTGCCAACCTATTGGATCAAGATACGATGCACAACTTGCAGTCTTTGGAAGTGAATTCCAAAAGAAACTGTCAGAACAGAAGTACTTTATTGTTGGTGCTGGCGCCATTGGATGTGAACATCTTAAAAACTTTGCCATGATGGGATTAGGTTGCAGTGATGCAGGGCGCGTGTTTGTTACAGATATGGACACCATCGAGAAATCAAACCTTAACAGACAGTTCCTGTTCAGACCAGGAGATGTGCAGCAAATGAAATCAGACGTTGCTGCAAGGGCAGTGAAGGTCATGAATCCTGAGATTAATATTACAGCGCACCAGAACAGAGTTGGACCAGAAACAGAGAAAGTATACAATGATGACTTCTTTGAAGCTCTTAATGGTGTGACAAATGCCTTGGATAACATTGATGCCAGAATGTACATGGACAGGAGGTGTGTATATTATCACAAACCACTCTTGGAATCAGGAACGTTAGGAACCAAAGGAAATGTTCAGGTTGTGCTGCCTTTCCTGACAGAATCTTACAGCTCCTCACAGGACCCCCCAGAGAAATCAATTCCTATTTGTACACTAAAGAATTTCCCCAACGCTATTGAACACACTTTACAGTGGGCGAGAGATGCGTTTGAAGGACTCTTCACTATTCCCGTGGAGAATGTTAACCAGTTTATGGGTGACCCCAAGTATGTTGACAGAACAGACAAGCTTCCTGGGATGCAAGCCGCTGAAATTTTCGACAGCATCAAAAAATGTCTGTTTGACGAGCGGCCCCGTGAATTTGCTGACTGTGTGAGTTGGGCCAGAATACAGTTCCAAGAAAACTACCACAACACGATCTGTCAACTGCTCTTCAACTTCCCTCCCGACCAGCTAACTAGTTCAGGACAGCCGTTTTGGTCTGGTCCTAAGCGATGCCCTCATCCTCTGGACTTTGATCCTTGCGAGCAAACACACATGGACTATGTTGTTGCTGCTGCTAACTTGCGAGCGTACATGTTTGGAATCAAAGGATCAAGAGACCAAAAACTAATTCTTAATTGTTTGAAAACTGTCACGGTACCGAAGTTTCAACCCAGATCAGGCGTGAAAATTTCTGTTACCGACGAAGAGGCCGCTCAAGAAGGCTCTGGTGCTGTTGATGACGATGACCTAGAAAAGGTGAAAGGTGCTATTCTGGCAGCAAAAGAGAAACTGTCAGGCTTCAAGATGGCACCCGTTGAATTTGAAAAGGATGATGACACGAATTTTCACATGGACTTTATAGTGGCAACCTCCAACCTTAGAGCGGCTAACTACTCCATCCCACCAGCAGATAGGCACAAGAGTAAGTTGATTGCTGGCAAGATTATTCCCGCCATCGCCACTACAACCGCCTTAGTAAGTGGACTGGTCGCACTGGAGTTGTACAAGATTGTTCAAGGAAATGAAAAACTGGAGACCTATAAGAATGGGTTCATCAATCTTGCCTTGCCGTTCTTTGGCTTTTCTGAACCAATCACTGCACCGACAAACAAGTATTACGACAAAGAATTCACTCTGTGGGATCGGTTTGAAGTCAACGGTTTGTATGAAGATGGCCACGAGATGACCATGAAGGAACTCTTTGAATACTTCCAGAACACGCACAAGCTTGAAGTGACGATGCTTTCTCAAGGAGTTTGCATGCTGTACTCATTCTTTATGCCCGCTGCCAAGATGAAGGACAGATTAGCCTTAAAAGTATCCGAGGCTGTGGAAAAGGTTTCCAAGAAGAAAATTAAATCTTACGTCAAAGCTTTGGTGCTCGAGCTGTGCTGTAACGACACAGAGGGCGAAGATGTCGAGGTCCCGTATGTACGCTACCGTTTCCGGTTATCTTCATTCAAAAACTACTCCTTCTGTGCGTCACTGCCAAGAGCTTCAGCAGCTATTTTGAGCAACCAAGAAACAACGAAGACGTCGGGGAAGAAGATGAATCCTGGTGAAGAAAAGAAGAAAGTCCTGTCTAAGAAAGAAGAACTCCTGGCTAAGGCGGCAGAAATTGGCCAGCAGAGAGCGGATGAGATAGCGCAGCAGCAGAAAAGAGCAAAGAGAAATTGTGAAAAACGGAGTGTGTACAAATCCTAA

Transcript

OS493_021775-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KMV5	Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus OX=9913 GN=UBA1 PE=2 SV=1
Q02053	Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus OX=10090 GN=Uba1 PE=1 SV=1
Q29504	Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus OX=9986 GN=UBA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001434 (this species only)
Ubiquitin family	E1\|ThiF\|ThiF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09358 all species →	E1_UFD	Ubiquitin fold domain	Domain	Interproscan
PF10585 all species →	UBA_E1_SCCH	Ubiquitin-activating enzyme, SCCH domain	Domain	Interproscan
PF00899 all species →	ThiF	ThiF family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045886 all species →	Family	ThiF/MoeB/HesA family	Interproscan
IPR018965 all species →	Domain	Ubiquitin-activating enzyme E1, C-terminal	Interproscan
IPR035985 all species →	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR018075 all species →	Family	Ubiquitin-activating enzyme E1	Interproscan
IPR042063 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, SCCH domain	Interproscan
IPR038252 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, C-terminal domain superfamily	Interproscan
IPR019572 all species →	Domain	Ubiquitin-activating enzyme, SCCH domain	Interproscan
IPR000594 all species →	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR018074 all species →	Conserved_site	Ubiquitin-activating enzyme E1, conserved site	Interproscan
IPR033127 all species →	Active_site	Ubiquitin-activating enzyme E1, Cys active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953 all species →	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004839 all species →	Molecular Function	ubiquitin activating enzyme activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0032446 all species →	Biological Process	protein modification by small protein conjugation	Interproscan
GO:0008641 all species →	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03178	UBE1, UBA1; ubiquitin-activating enzyme E1	EC:6.2.1.45	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_021775-T1 global co-expression network