Gene detail

Detailed information of OS493_021800-T1 in Lophelia pertusa

Genomic Location: scaffold_86:312585...317180
NR annotation: KAJ7384392.1, ELMO domain-containing protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96FG2	ELMO domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ELMOD3 PE=1 SV=2
Q58DT5	ELMO domain-containing protein 3 OS=Bos taurus OX=9913 GN=ELMOD3 PE=2 SV=1
Q91YP6	ELMO domain-containing protein 3 OS=Mus musculus OX=10090 GN=Elmod3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007804 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04727 all species →	ELMO_CED12	ELMO/CED-12 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006816 all species →	Domain	ELMO domain	Interproscan
IPR050868 all species →	Family	Engulfment and cell motility domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12771 all species →	ENGULFMENT AND CELL MOTILITY	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_021800-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23538	ELMOD; ELMO domain-containing protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021800-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

21.4Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.46	20.23
polyp at pH7 6	18	18	11.68	18.20
coral polyp · control treatment	16	16	9.66	15.06
coral polyp · oil and dispersant treatment	16	16	6.36	9.66
coral polyp · oil treatment	16	16	9.20	11.49
coral polyp · dispersant treatment	16	16	5.01	7.47
Polyp	10	10	13.09	21.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.03
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.27
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	21.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.89
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.50

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.