Gene detail

Detailed information of OS493_021812-T1 in Lophelia pertusa

Genomic Location: scaffold_86:427313...431188
NR annotation: KAJ7384401.1, hypothetical protein OS493_021812 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SK27	Probable ethanolamine kinase OS=Nematostella vectensis OX=45351 GN=etnk PE=3 SV=1
Q9HBU6	Ethanolamine kinase 1 OS=Homo sapiens OX=9606 GN=ETNK1 PE=1 SV=1
Q9D4V0	Ethanolamine kinase 1 OS=Mus musculus OX=10090 GN=Etnk1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004792 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01633 all species →	Choline_kinase	Choline/ethanolamine kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22603 all species →	CHOLINE/ETHANOALAMINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004305 all species →	Molecular Function	ethanolamine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006646 all species →	Biological Process	phosphatidylethanolamine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00894	ETNK, EKI; ethanolamine kinase	EC:2.7.1.82	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021812-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

11.4Max TPM

4.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.79	6.07
polyp at pH7 6	18	17	4.03	9.04
coral polyp · control treatment	16	16	6.14	10.62
coral polyp · oil and dispersant treatment	16	16	3.03	6.18
coral polyp · oil treatment	16	16	5.24	11.42
coral polyp · dispersant treatment	16	16	3.84	8.35
Polyp	10	9	3.96	9.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.26
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.69
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.08
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.