Gene detail

Detailed information of OS493_021853-T1 in Lophelia pertusa

Genomic Location: scaffold_86:1001574...1004600
NR annotation: KAJ7384440.1, hypothetical protein OS493_021853 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V7B1	Protein CFAP20DC OS=Rattus norvegicus OX=10116 GN=Cfap20dc PE=2 SV=1
Q6P2K3	Protein CFAP20DC OS=Mus musculus OX=10090 GN=Cfap20dc PE=2 SV=2
Q6ZVT6	Protein CFAP20DC OS=Homo sapiens OX=9606 GN=CFAP20DC PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007085 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05018 all species →	CFA20_dom	CFA20 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040441 all species →	Family	Cilia- and flagella-associated protein 20/CFAP20DC	Interproscan
IPR007714 all species →	Domain	CFA20 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12458 all species →	ORF PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_021853-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021853-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021853-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

33.3Max TPM

6.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.05	9.88
polyp at pH7 6	18	18	5.10	8.40
coral polyp · control treatment	16	16	8.81	33.28
coral polyp · oil and dispersant treatment	16	16	7.11	24.71
coral polyp · oil treatment	16	16	6.56	10.37
coral polyp · dispersant treatment	16	16	5.10	8.17
Polyp	10	10	2.92	5.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.44
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.20
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.11
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.71
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.93

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.