Gene detail

Detailed information of OS493_021885-T1 in Lophelia pertusa

Genomic Location: scaffold_87:49254...54925
NR annotation: KAJ7378586.1, ASF1 anti-silencing function 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQE6	Histone chaperone ASF1A OS=Mus musculus OX=10090 GN=Asf1a PE=1 SV=1
Q2KIG1	Histone chaperone ASF1A OS=Bos taurus OX=9913 GN=ASF1A PE=2 SV=1
Q9Y294	Histone chaperone ASF1A OS=Homo sapiens OX=9606 GN=ASF1A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007284 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04729 all species →	ASF1_hist_chap	ASF1 like histone chaperone	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006818 all species →	Family	Histone chaperone ASF1-like	Interproscan
IPR036747 all species →	Homologous_superfamily	Histone chaperone ASF1-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12040 all species →	ANTI-SILENCING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0006335 all species →	Biological Process	DNA replication-dependent chromatin assembly	Interproscan
GO:0006336 all species →	Biological Process	chromatin organization	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10753	ASF1; histone chaperone ASF1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021885-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

189.8Max TPM

48.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	43.06	75.57
polyp at pH7 6	18	18	48.30	63.16
coral polyp · control treatment	16	16	56.03	189.76
coral polyp · oil and dispersant treatment	16	16	59.72	170.35
coral polyp · oil treatment	16	16	46.59	72.46
coral polyp · dispersant treatment	16	16	37.85	52.69
Polyp	10	10	49.77	77.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.77
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	189.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.13
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.94
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.05
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.14
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	77.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	68.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	61.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	54.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	48.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	44.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	40.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	37.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	33.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.