Gene detail

Detailed information of OS493_021945-T1 in Lophelia pertusa

Genomic Location: scaffold_87:842958...847147
NR annotation: KAJ7378643.1, Dipeptidyl peptidase 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UHL4	Dipeptidyl peptidase 2 OS=Homo sapiens OX=9606 GN=DPP7 PE=1 SV=3
Q9EPB1	Dipeptidyl peptidase 2 OS=Rattus norvegicus OX=10116 GN=Dpp7 PE=1 SV=1
Q9ET22	Dipeptidyl peptidase 2 OS=Mus musculus OX=10090 GN=Dpp7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001436 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_021945-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR042269 all species →	Homologous_superfamily	Serine carboxypeptidase S28, SKS domain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021945-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021945-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

29.2Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.95	20.29
polyp at pH7 6	18	16	12.21	29.20
coral polyp · control treatment	16	15	7.71	24.90
coral polyp · oil and dispersant treatment	16	15	6.29	22.93
coral polyp · oil treatment	16	16	7.69	15.08
coral polyp · dispersant treatment	16	14	4.81	11.42
Polyp	10	9	6.27	14.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.29
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.85
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.69
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.18
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.