Gene detail

Detailed information of OS493_021946-T1 in Lophelia pertusa

Genomic Location: scaffold_87:849756...853259
NR annotation: no NCBI-NR hit recorded
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

No Pfam domain signature was recorded for OS493_021946-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR045152 all species →	Family	Enhancer of mRNA-decapping protein 4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15598 all species →	ENHANCER OF MRNA-DECAPPING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0031087 all species →	Biological Process	deadenylation-independent decapping of nuclear-transcribed mRNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021946-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021946-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

16.2Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.28	11.51
polyp at pH7 6	18	18	6.09	12.95
coral polyp · control treatment	16	16	3.89	15.84
coral polyp · oil and dispersant treatment	16	14	2.15	9.80
coral polyp · oil treatment	16	16	3.81	14.06
coral polyp · dispersant treatment	16	16	1.45	5.74
Polyp	10	10	5.55	16.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.51
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.81

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.