Gene detail

Detailed information of OS493_021981-T1 in Lophelia pertusa

Genomic Location: scaffold_87:1291115...1296345
NR annotation: KAJ7378677.1, Transcription activator BRG1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7Z019	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Bos taurus OX=9913 GN=SMARCA4 PE=2 SV=1
P51532	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Homo sapiens OX=9606 GN=SMARCA4 PE=1 SV=2
Q3TKT4	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Mus musculus OX=10090 GN=Smarca4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002797 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07529 all species →	HSA	HSA domain	Family	Interproscan
PF08880 all species →	QLQ	QLQ	Domain	Interproscan
PF07533 all species →	BRK	BRK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014012 all species →	Domain	Helicase/SANT-associated domain	Interproscan
IPR014978 all species →	Domain	Glutamine-Leucine-Glutamine, QLQ	Interproscan
IPR006576 all species →	Domain	BRK domain	Interproscan
IPR037259 all species →	Homologous_superfamily	BRK domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799 all species →	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021981-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_021981-T1 global co-expression network