Gene detail

Detailed information of OS493_022026-T1 in Lophelia pertusa

Genomic Location: scaffold_88:800434...807572
NR annotation: KAJ7371928.1, CDGSH iron sulfur domain 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003656 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09360 all species →	zf-CDGSH	Iron-binding zinc finger CDGSH type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018967 all species →	Domain	Iron-binding zinc finger, CDGSH type	Interproscan
IPR052950 all species →	Family	CDGSH iron-sulfur domain-containing protein	Interproscan
IPR042216 all species →	Homologous_superfamily	MitoNEET, CDGSH iron-sulfur domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46491 all species →	CDGSH IRON SULFUR DOMAIN PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0106034 all species →	Biological Process	protein maturation by [2Fe-2S] cluster transfer	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23886	CISD3; CDGSH iron-sulfur domain-containing protein 3	-	Transport	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022026-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

78.9Max TPM

19.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	39.50	78.92
polyp at pH7 6	18	18	39.93	65.92
coral polyp · control treatment	16	13	9.56	27.59
coral polyp · oil and dispersant treatment	16	13	5.38	17.14
coral polyp · oil treatment	16	16	9.93	15.36
coral polyp · dispersant treatment	16	13	6.18	15.34
Polyp	10	9	25.38	48.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.48
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.59
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	48.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	42.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	30.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	27.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.