Gene detail

Detailed information of OS493_022103-T1 in Lophelia pertusa

Genomic Location: scaffold_89:536211...538470
NR annotation: KAJ7358670.1, Meckelin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BR76	Meckelin OS=Mus musculus OX=10090 GN=Tmem67 PE=1 SV=2
P0C152	Meckelin OS=Rattus norvegicus OX=10116 GN=Tmem67 PE=1 SV=1
Q5HYA8	Meckelin OS=Homo sapiens OX=9606 GN=TMEM67 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005384 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09773 all species →	Meckelin	Meckelin (Transmembrane protein 67)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019170 all species →	Family	Meckelin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21274 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036038 all species →	Cellular Component	MKS complex	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022103-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022103-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

27.3Max TPM

7.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.40	10.19
polyp at pH7 6	18	18	6.94	10.61
coral polyp · control treatment	16	16	9.38	27.34
coral polyp · oil and dispersant treatment	16	16	8.98	26.49
coral polyp · oil treatment	16	16	8.27	14.72
coral polyp · dispersant treatment	16	16	4.38	8.36
Polyp	10	10	5.51	8.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.54
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.67
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.72
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.97

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.