Gene detail

Detailed information of OS493_022104-T1 in Lophelia pertusa

Genomic Location: scaffold_89:544898...551723
NR annotation: KAJ7358671.1, Serine/threonine-protein phosphatase 2B catalytic subunit alpha [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VXF1	Serine/threonine-protein phosphatase 2B catalytic subunit 3 OS=Drosophila melanogaster OX=7227 GN=CanA-14F PE=1 SV=4
Q27889	Serine/threonine-protein phosphatase 2B catalytic subunit 2 OS=Drosophila melanogaster OX=7227 GN=Pp2B-14D PE=1 SV=2
P48454	Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform OS=Homo sapiens OX=9606 GN=PPP3CC PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000468 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041751 all species →	Domain	PP2B, metallophosphatase domain	Interproscan
IPR043360 all species →	Family	PP2B	Interproscan
IPR006186 all species →	Domain	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45673 all species →	SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005955 all species →	Cellular Component	calcineurin complex	Interproscan
GO:0033192 all species →	Molecular Function	calmodulin-dependent protein phosphatase activity	Interproscan
GO:0097720 all species →	Biological Process	calcineurin-mediated signaling	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04348	PPP3C, CNA; serine/threonine-protein phosphatase 2B catalytic subunit	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022104-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

119.6Max TPM

62.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	50.56	82.66
polyp at pH7 6	18	18	47.65	77.65
coral polyp · control treatment	16	16	78.65	119.58
coral polyp · oil and dispersant treatment	16	16	83.38	111.80
coral polyp · oil treatment	16	16	71.04	108.77
coral polyp · dispersant treatment	16	16	64.66	109.00
Polyp	10	10	29.50	58.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.95
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.89
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.22
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.05
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	58.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	48.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	36.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	28.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.77
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.