Gene detail

Detailed information of OS493_022176-T1 in Lophelia pertusa

Genomic Location: scaffold_90:20044...26558
NR annotation: KAJ7330565.1, Mitochondrial GTPase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E3TDS3	Mitochondrial ribosome-associated GTPase 1 OS=Ictalurus punctatus OX=7998 GN=mtg1 PE=2 SV=1
Q4PS77	Mitochondrial ribosome-associated GTPase 1 OS=Bos taurus OX=9913 GN=MTG1 PE=2 SV=2
Q9BT17	Mitochondrial ribosome-associated GTPase 1 OS=Homo sapiens OX=9606 GN=MTG1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004030 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR023179 all species →	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45782 all species →	MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022176-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022176-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

32.8Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.63	12.86
polyp at pH7 6	18	17	9.28	19.07
coral polyp · control treatment	16	16	8.96	24.80
coral polyp · oil and dispersant treatment	16	16	6.32	15.56
coral polyp · oil treatment	16	16	8.67	14.99
coral polyp · dispersant treatment	16	16	5.35	11.88
Polyp	10	10	10.70	32.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.31
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	32.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.68
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.