Gene detail

Detailed information of OS493_022177-T1 in Lophelia pertusa

Genomic Location: scaffold_90:27590...47565
NR annotation: KAJ7330566.1, hypothetical protein OS493_022177 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7YU29	Dystrophin, isoform E OS=Drosophila melanogaster OX=7227 GN=Dys PE=1 SV=1
Q9VDW3	Dystrophin, isoform B OS=Drosophila melanogaster OX=7227 GN=Dys PE=1 SV=3
Q0KI50	Dystrophin, isoform D OS=Drosophila melanogaster OX=7227 GN=Dys PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003291 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09068 all species →	EF-hand_2	EF hand	Domain	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR015153 all species →	Domain	EF-hand domain, type 1	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR050774 all species →	Family	KCMF1 and Dystrophin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268 all species →	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0099536 all species →	Biological Process	synaptic signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022177-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022177-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

12.5Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.69	8.04
polyp at pH7 6	18	14	2.96	5.49
coral polyp · control treatment	16	16	6.50	12.49
coral polyp · oil and dispersant treatment	16	16	6.21	10.48
coral polyp · oil treatment	16	16	5.68	8.77
coral polyp · dispersant treatment	16	16	6.92	9.78
Polyp	10	9	4.50	8.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.93
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.