Gene detail

Detailed information of OS493_022221-T1 in Lophelia pertusa

Genomic Location: scaffold_90:527381...531587
NR annotation: KAJ7330606.1, hypothetical protein OS493_022221 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88696	ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Mus musculus OX=10090 GN=Clpp PE=1 SV=1
Q16740	ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Homo sapiens OX=9606 GN=CLPP PE=1 SV=1
Q2KHU4	ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Bos taurus OX=9913 GN=CLPP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00574 all species →	CLP_protease	Clp protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023562 all species →	Family	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Interproscan
IPR001907 all species →	Family	ATP-dependent Clp protease proteolytic subunit	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR033135 all species →	Active_site	ClpP, histidine active site	Interproscan
IPR018215 all species →	Active_site	ClpP, Ser active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10381 all species →	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0009368 all species →	Cellular Component	endopeptidase Clp complex	Interproscan
GO:0051117 all species →	Molecular Function	ATPase binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit	EC:3.4.21.92	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022221-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

29.2Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	6.20	8.70
polyp at pH7 6	18	15	5.84	11.13
coral polyp · control treatment	16	16	10.65	29.24
coral polyp · oil and dispersant treatment	16	16	8.04	22.92
coral polyp · oil treatment	16	16	8.77	15.91
coral polyp · dispersant treatment	16	15	5.96	14.27
Polyp	10	10	7.72	17.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.24
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.95
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.27
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.