Gene detail

Detailed information of OS493_022272-T1 in Lophelia pertusa

Genomic Location: scaffold_90:1235661...1236212
NR annotation: KAJ7330657.1, hypothetical protein OS493_022272 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011261 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14719 all species →	PID_2	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR039112 all species →	Family	Phosphotyrosine interaction domain containing 1	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16265 all species →	PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0046627 all species →	Biological Process	negative regulation of insulin receptor signaling pathway	Interproscan
GO:0051881 all species →	Biological Process	regulation of mitochondrial membrane potential	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022272-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022272-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

37.6Max TPM

8.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.16	13.70
polyp at pH7 6	18	18	5.44	12.29
coral polyp · control treatment	16	16	9.76	13.93
coral polyp · oil and dispersant treatment	16	16	7.89	20.52
coral polyp · oil treatment	16	16	8.13	15.29
coral polyp · dispersant treatment	16	16	13.14	37.63
Polyp	10	10	9.64	32.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.97
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.81
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.19
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.01
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	32.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.85

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.