Gene detail

Detailed information of OS493_022277-T1 in Lophelia pertusa

Genomic Location: scaffold_90:1263695...1264228
NR annotation: KAJ7330662.1, hypothetical protein OS493_022277 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008340 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14719 all species →	PID_2	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039112 all species →	Family	Phosphotyrosine interaction domain containing 1	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16265 all species →	PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0046627 all species →	Biological Process	negative regulation of insulin receptor signaling pathway	Interproscan
GO:0051881 all species →	Biological Process	regulation of mitochondrial membrane potential	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022277-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022277-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

26.7Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.68	15.47
polyp at pH7 6	18	18	8.21	15.76
coral polyp · control treatment	16	16	9.05	13.57
coral polyp · oil and dispersant treatment	16	15	6.66	16.46
coral polyp · oil treatment	16	16	9.12	26.69
coral polyp · dispersant treatment	16	16	7.62	18.18
Polyp	10	10	12.16	24.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.58
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.76
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.77
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.