Gene detail

Detailed information of OS493_022281-T1 in Lophelia pertusa

Genomic Location: scaffold_90:1301554...1307074
NR annotation: KAJ7330666.1, Mitogen-activated protein kinase kinase kinase kinase 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95819	Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens OX=9606 GN=MAP4K4 PE=1 SV=2
P97820	Mitogen-activated protein kinase kinase kinase kinase 4 OS=Mus musculus OX=10090 GN=Map4k4 PE=1 SV=1
Q9JM52	Misshapen-like kinase 1 OS=Mus musculus OX=10090 GN=Mink1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004022 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00780 all species →	CNH	CNH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001180 all species →	Domain	Citron homology (CNH) domain	Interproscan
IPR051700 all species →	Family	STE20 Ser/Thr Protein Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47096 all species →	MISSHAPEN LIKE KINASE 1	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_022281-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022281-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022281-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

88.1Max TPM

49.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	45.58	58.32
polyp at pH7 6	18	18	46.89	59.13
coral polyp · control treatment	16	16	54.83	80.92
coral polyp · oil and dispersant treatment	16	16	52.73	88.06
coral polyp · oil treatment	16	16	54.28	75.89
coral polyp · dispersant treatment	16	16	43.06	63.66
Polyp	10	10	47.25	83.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.76
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.93
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.11
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	83.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	78.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	71.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	61.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	54.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	44.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.36

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.