Gene detail

Detailed information of OS493_022302-T1 in Lophelia pertusa

Genomic Location: scaffold_90:1514395...1515869
NR annotation: KAJ7330686.1, hypothetical protein OS493_022302 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P0F4	RNA-binding protein 7 OS=Danio rerio OX=7955 GN=rbm7 PE=2 SV=1
P57052	Splicing regulator RBM11 OS=Homo sapiens OX=9606 GN=RBM11 PE=1 SV=1
Q80YT9	Splicing regulator RBM11 OS=Mus musculus OX=10090 GN=Rbm11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR052285 all species →	Family	Nuclear exosome targeting complex subunit	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13798 all species →	RNA BINDING MOTIF RBM PROTEIN -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022302-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_022302-T1 global co-expression network