Gene detail

Detailed information of OS493_022332-T1 in Lophelia pertusa

Genomic Location: scaffold_91:496034...501488
NR annotation: KAJ7390774.1, AHA1, activator of heat shock 90kDa protein ATPase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95433	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens OX=9606 GN=AHSA1 PE=1 SV=1
Q8BK64	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Mus musculus OX=10090 GN=Ahsa1 PE=1 SV=2
Q8N9S3	Activator of 90 kDa heat shock protein ATPase homolog 2 OS=Mus musculus OX=10090 GN=Ahsa2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007953 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08327 all species →	AHSA1	Activator of Hsp90 ATPase homolog 1-like protein	Family	Interproscan
PF09229 all species →	Aha1_N	Activator of Hsp90 ATPase, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015310 all species →	Domain	Activator of Hsp90 ATPase AHSA1-like, N-terminal	Interproscan
IPR036338 all species →	Homologous_superfamily	Activator of Hsp90 ATPase, Aha1	Interproscan
IPR013538 all species →	Domain	Activator of Hsp90 ATPase homologue 1-like, C-terminal	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13009 all species →	HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0032781 all species →	Biological Process	positive regulation of ATP-dependent activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26216	AHSA1, AHA1; activator of Hsp90 ATPase protein 1	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022332-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

44.7Max TPM

15.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.54	16.37
polyp at pH7 6	18	18	12.69	25.32
coral polyp · control treatment	16	16	19.43	44.73
coral polyp · oil and dispersant treatment	16	16	23.84	42.32
coral polyp · oil treatment	16	16	16.01	30.24
coral polyp · dispersant treatment	16	16	15.58	26.99
Polyp	10	10	9.91	18.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.37
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.52
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.98
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.82
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.96
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.53
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.67
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.95
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.