Gene detail

Detailed information of OS493_022334-T1 in Lophelia pertusa

Genomic Location: scaffold_91:504679...505599
NR annotation: KAJ7390776.1, Craniofacial development protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q75UQ2	Craniofacial development protein 1 OS=Rattus norvegicus OX=10116 GN=Cfdp1 PE=1 SV=1
Q9UEE9	Craniofacial development protein 1 OS=Homo sapiens OX=9606 GN=CFDP1 PE=1 SV=1
Q4ADK4	Craniofacial development protein 1 OS=Muntiacus reevesi OX=9886 GN=CFDP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006449 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07572 all species →	BCNT	Bucentaur or craniofacial development	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011421 all species →	Domain	BCNT-C domain	Interproscan
IPR027124 all species →	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48319 all species →	CRANIOFACIAL DEVELOPMENT PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000812 all species →	Cellular Component	Swr1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022334-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022334-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

14.0Max TPM

6.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.95	8.18
polyp at pH7 6	18	18	5.22	9.28
coral polyp · control treatment	16	16	8.47	13.97
coral polyp · oil and dispersant treatment	16	16	7.18	10.36
coral polyp · oil treatment	16	16	7.93	11.01
coral polyp · dispersant treatment	16	16	3.41	6.18
Polyp	10	9	4.88	10.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.15
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.20
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.21
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.