Gene detail

Detailed information of OS493_022354-T1 in Lophelia pertusa

Genomic Location: scaffold_91:850478...856875
NR annotation: KAJ7390796.1, hypothetical protein OS493_022354 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28024	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 OS=Bos taurus OX=9913 GN=GNG12 PE=1 SV=2
P50151	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10 OS=Homo sapiens OX=9606 GN=GNG10 PE=1 SV=1
Q9DAS9	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 OS=Mus musculus OX=10090 GN=Gng12 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00631 all species →	G-gamma	GGL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036284 all species →	Homologous_superfamily	G-protein gamma-like domain superfamily	Interproscan
IPR001770 all species →	Family	G-protein, gamma subunit	Interproscan
IPR015898 all species →	Domain	G-protein gamma-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13809 all species →	GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005834 all species →	Cellular Component	heterotrimeric G-protein complex	Interproscan
GO:0031681 all species →	Molecular Function	G-protein beta-subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022354-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022354-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

33.6Max TPM

10.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	11.43	22.77
polyp at pH7 6	18	18	12.64	28.42
coral polyp · control treatment	16	16	9.97	16.10
coral polyp · oil and dispersant treatment	16	15	6.79	11.57
coral polyp · oil treatment	16	16	9.49	16.90
coral polyp · dispersant treatment	16	16	6.93	18.63
Polyp	10	9	15.80	33.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.23
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.18
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.03
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	33.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.