Gene detail

Detailed information of OS493_022360-T1 in Lophelia pertusa

Genomic Location: scaffold_91:931868...933748
NR annotation: KAJ7390802.1, Mitochondrial amidoxime reducing component 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q655R6	Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica OX=39947 GN=MCSU3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001380 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03473 all species →	MOSC	MOSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005302 all species →	Domain	Molybdenum cofactor sulfurase, C-terminal	Interproscan
IPR011037 all species →	Homologous_superfamily	Pyruvate kinase-like, insert domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for OS493_022360-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030151 all species →	Molecular Function	molybdenum ion binding	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022360-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022360-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

21.9Max TPM

7.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	6.98	13.99
polyp at pH7 6	18	14	7.61	14.99
coral polyp · control treatment	16	16	11.00	21.86
coral polyp · oil and dispersant treatment	16	16	6.25	10.69
coral polyp · oil treatment	16	16	9.24	17.44
coral polyp · dispersant treatment	16	15	5.19	10.13
Polyp	10	9	4.40	8.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.75
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.36
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.